Multimarker and rare variants genomewide association studies for bone weight in Simmental cattle

Bone weight, defined as the total weight of the bones in all the forequarter and hindquarter joints, can reflect somebody conformation traits and skeletal diseases. To gain a better understanding of the genetic determinants of bone weight, we used a composite strategy including multimarker and rare‐marker association to perform genomewide association studies (GWAS) for that character in Simmental cattle. Our strategy consisted of three models: (i) A traditional linear mixed model (LMM) was applied (Q+K‐LMM); (ii) single nucleotide polymorphisms (SNPs) with p‐values less than .05 from the LMM were selected to undergo the least absolute shrinkage and selector operator (Lasso) in the second stage (LMM‐Lasso); (iii) genes containing two or more rare SNPs were examined by performing the sequence kernel association test (gene‐based SKAT). A total of 1,225 cattle were genotyped with an Illumina BovineHD BeadChip containing 770,000 SNPs. After the quality‐control procedures, 1,217 individuals with 608,696 common SNPs and 105,787 rare SNPs (with 0.001 < minor allele frequency [MAF] <0.05) remained in the sample for analysis. A traditional LMM successfully mapped three genes associated with bone weight, while LMM‐Lasso identified nine genes, which included all genes found by traditional LMM. Only a single gene, EPHB3, surpassed the significance threshold after Bonferroni correction in gene‐based SKAT. In conclusion, based on functional annotation and results from previous endeavours, we believe that LCORL, RIMS2, LAP3, PRKAR2B, CHSY1, MAP2K6 and EPHB3 are candidate genes for bone weight. In general, such a comprehensive strategy for GWAS may be useful for researchers seeking to probe the full genetic architecture underlying economic traits in livestock.     

基质对黑果腺肋花楸幼苗生长的影响

以黑果腺肋花楸(Aronia melanocarpa)为试验材料,选用田园土、泥炭土、珍珠岩和黄沙,采用正交试验设计,研究不同基质配比对黑果腺肋花楸成苗率以及幼苗形态指标和生理指标的影响。结果表明,不同育苗基质对黑果腺肋花楸出苗率、苗高、地径、主根长、侧根数和高径比等形态指标以及根系活力、可溶性糖、淀粉和蛋白质等生理指标的影响差异显著,综合分析各项指标,筛选出适合黑果腺肋花楸容器育苗的栽培基质为田园土(40%)+泥炭土(30%)+黄沙(30%)、田园土(40%)+珍珠岩(30%)+黄沙(30%)、田园土(40%)+泥炭土(30%)+珍珠岩(30%)和田园土(60%)+泥炭土(20%)+黄沙(20%)。     

羔羊日粮精粗比对其肉及脂肪组织中脂肪酸组成的影响

为了研究不同精粗比日粮对广河羊羔肉品质的影响,在广河县羔羊肉生产区,选择不同精粗比饲喂的6月龄健康陶寒杂交(陶赛特羊♂×小尾寒羊♀)断奶去势公羔各3只进行屠宰,取股二头肌、背最长肌、肱二头肌3个部位肌肉和肾周脂肪、皮下脂肪、尾部脂肪3个部位脂肪,用气象色谱法分析其脂肪酸的种类及含量。结果表明,在所有组织中均检测出38种脂肪酸,其中饱和脂肪酸17种,不饱和脂肪酸21种。脂肪组织中饲喂低精粗比日粮的亚油酸(C18∶2n6c)、α-亚麻酸(C18∶3n3)、饱和脂肪酸(SFA)、多不饱和脂肪酸(PUFA)及其与饱和脂肪酸比值(P/S)、n3系多不饱和脂肪酸和n6系多不饱和脂肪酸均显著高于饲喂高精粗比日粮(P<0.05);饲喂低精粗比日粮的所有组织中花生四烯酸(C20∶4)的含量显著高于饲喂高精粗比日粮(P<0.05);与饲喂高精粗比日粮的羊羔肉相比,饲喂低精粗比日粮既节省了生产成本又明显改善和提高了羊羔肉中脂肪酸的营养价值。     

Impact of cold-season grazing and supplementary feeding on rumen metabolic parameters and micro-organisms in the ewes of Gansu Alpine Fine Wool Sheep北大核心CSCD

An experiment was conducted to scientifically identify the appropriate feed for Gansu Alpine Fine Wool ewes in order to change the animals' breeding mode, which currently can only be mated at the age of 2.5 years due to insufficient nutritional supply. The experiment selected 48 12-month-old ewes and randomly divided them into group a (Diet 1), group b (Diet 2), group c (Diet 3), and a control group with no supplementary feeding. The feed test was run for 90 days. The rumen pH of groups a and b were very significantly higher (P<0.01) or group c significantly lower (P<0.05) than control group. The rumen ammonia nitrogen, protein nitrogen and total nitrogen of groups a, b and c were all higher than control group (P<0.01). The total volatile fatty acids of group a and b were all higher than the control group (P<0.01), group b significantly higher than group c (P<0.05). The molar ratio of acetic acid and propionic acid in group a was very significantly higher than control group (P<0.01), group b and c were significantly higher than control group (P<0.05). The molar ratio of butyric acid in group a was very significantly higher than group c (P<0.01). The ratio of acetic acid and propionic acid in group b was significantly lower than control group (P<0.05). The number of several rumen fiber-degrading bacteria and protozoa in groups a, b and c were very significantly (P<0.01) or significantly (P<0.05) higher than the control. In conclusion, this study shows that supplementary feeding can positively affect the rumen metabolic parameters and the number of several rumen microorganisms in Gansu Alpine Fine Wool ewes. In general, the effects of Diet 1 were the strongest, while Diet 2 also produced notable improvements. © 2018, Editorial Office of Acta Prataculturae Sinica. All rights reserved.     

Differential Cl−/Salt Tolerance and NaCl‐Induced Alternations of Tissue and Cellular Ion Fluxes in Glycine max,Glycine soja and their Hybrid Seedlings

The salt‐sensitive Glycine max N23674 cultivar, the salt‐born Glycine soja BB52 population, and their hybrid 4076 strain (F₅) selected for salt tolerance generation by generation were used as the experimental materials in this study. First, the effects of NaCl stress on seed germination, tissue damage, and time‐course ionic absorption and transportation were compared. When qualitatively compared with seed germination appearance in culture dishes, and tissue damages on roots or leaves of seedlings, or quantitatively compared with the relative salt injury rate, the inhibition on N23674 was all the most remarkable. After the exposure of 140 mm NaCl for 1 h, 4 h, 8 h, 12 h, 2 days and 4 days, the content of Cl^? gradually increased in the roots and leaves of seedlings of BB52, 4076 and 23674. Interestingly, the extents of the Cl^? rise in roots of the three experimental soybean materials were BB52 > 4076 > N23674, whereas those in leaves were just on the contrary. Secondly, by using the scanning ion‐selective electrode technique (SIET), fluxes of Na⁺ and Cl^? in roots and protoplasts isolated from roots and leaves were also investigated among the three experimental soybean materials. After 140 mm NaCl stress for 2, 4 and 6 days, and when compared with N23674, slighter net Cl^? influxes were observed in root tissue and protoplasts of roots and leaves of BB52 and 4076 seedlings, especially at the cellular protoplast level. The results indicate that with regard to the ionic effect of NaCl stress, Cl^? was the main determinant salt ion for salt tolerance in G. soja, G. max and their hybrid, and the difference in their Cl^?/salt tolerance is mainly attributed to the capacity of Cl^? restriction to the plant above‐ground parts such as leaves.     

信息化、社会网络与农户农资购买渠道选择——基于公司直销与农资零售店的比较

农户购买农资时面临多样化的购买渠道,而信息化与社会网络是影响农户农资购买渠道选择的重要因素。本文利用陕西、甘肃、山东和云南四省农户调研数据,比较了公司直销与农资零售店两种购买渠道的差异,运用二元 Logit 模型和中介效应模型,分析信息化与社会网络对农户农资购买渠道选择的影响。结果表明,农户选择公司直销与农资零售店的比例分别为10.1%和89.9%,即大多数农户选择农资零售店购买农资。信息利用对农户选择公司直销渠道具有显著正向影响;从亲戚和朋友两个维度测量社会网络,发现宗族型社会网络对农户选择公司直销渠道产生了正向影响,朋友圈型社会网络影响不显著;农户农资市场信息认知在信息利用促进农户选择公司直销渠道中发挥部分中介效应。因此,政府应加强农村信息基础设施建设,培养农户信息利用能力。公共信息供给过程中扩大宣传对象群体,促使信息在农户社会网络中有效扩散传播。建设农资企业与农户间有效的信息交流平台,打破信息壁垒,从而帮助农户改进农资购买决策。     

Genome‐Wide Identification of MicroRNAs Responsive to High Temperature in Rice (Oryza sativa) by High‐Throughput Deep Sequencing

MicroRNAs (miRNAs) are known to play important roles in plant growth and stress response. Heat stress is a severe abiotic stresses by adversely affecting plant growth and yield. To identify heat‐responsive miRNAs at the genome‐wide level in rice (Oryza sativa), we constructed two small RNA libraries from young panicles treated or not with heat conditions. Ion torrent sequencing of the two libraries identified 294 known miRNAs and 539 novel miRNAs. Differential expression analysis showed that 26 miRNAs were downregulated and 21 miRNAs were upregulated in response to heat stress. Among them, five heat‐responsive miRNAs, including miR162b, miR529a‐p5, PC‐5P‐62245‐9, miR171b and miR169n, were validated by quantitative real‐time polymerase chain reaction. A total of 44 target genes of the differentially expressed miRNAs were predicted. These target genes are most significantly overrepresented in the cell growth process. The results demonstrated that rice miRNAs play critical roles in the heat stress response. This study opens up a new avenue for understanding the regulatory mechanisms of miRNAs involvement in the heat stress response in rice.